Publications

2014
Liu, Bo, Wenbin Lu, and Jiajia Zhang. "Accelerated intensity frailty model for recurrent events data." Biometrics 70, no. 3 (2014): 579-87.
Kidwell, KM. Addressing the Challenges and Reaping the Benefits of SMARTs., 2014.
Wang, Xin, Michael P. Epstein, and Jung-Ying Tzeng. "Analysis of gene-gene interactions using gene-trait similarity regression." Hum Hered 78, no. 1 (2014): 17-26.
Verbeke, Geert, Steffen Fieuws, Geert Molenberghs, and Marie Davidian. "The analysis of multivariate longitudinal data: a review." Stat Methods Med Res 23, no. 1 (2014): 42-59.
Zhang, Danjie, Ming-Hui Chen, Joseph G. Ibrahim, Mark E. Boye, Ping Wang, and Wei Shen. "Assessing model fit in joint models of longitudinal and survival data with applications to cancer clinical trials." Stat Med 33, no. 27 (2014): 4715-33.
Wahed, AS. Baseline Covariate Adjustment in SMART Studies via Artificial Randomization., 2014.
Zhu, Hongtu, Joseph G. Ibrahim, and Qingxia Chen. "Bayesian Case-deletion Model Complexity and Information Criterion." Stat Interface 7, no. 4 (2014): 531-542.
Chen, Ming-Hui, Joseph G. Ibrahim, Donglin Zeng, Kuolung Hu, and Catherine Jia. "Bayesian design of superiority clinical trials for recurrent events data with applications to bleeding and transfusion events in myelodyplastic syndrome." Biometrics 70, no. 4 (2014): 1003-13.
Zhang, Yuanye, Ming-Hui Chen, Joseph G. Ibrahim, Donglin Zeng, Qingxia Chen, Zhiying Pan, and Xiaodong Xue. "Bayesian gamma frailty models for survival data with semi-competing risks and treatment switching." Lifetime Data Anal 20, no. 1 (2014): 76-105.
Zhu, Hongtu, Zakaria Khondker, Zhaohua Lu, and Joseph G. Ibrahim. "Bayesian Generalized Low Rank Regression Models for Neuroimaging Phenotypes and Genetic Markers." J Am Stat Assoc 109, no. 507 (2014): 997-990.
Ibrahim, Joseph G., Ming-Hui Chen, Amy H Xia, Thomas Liu, and V Henessey. "Bayesian meta-experimental design for evaluating cardiovascular risk." In Quantitative Evaluation if Safety in Drug Development: Design, Analysis and Reporting, 13-38. Boca Raton: Chapman & Hall / CRC Press, 2014.
Zhu, Hongtu, Joseph G. Ibrahim, and Niansheng Tang. "Bayesian Sensitivity Analysis of Statistical Models with Missing Data." Stat Sin 24, no. 2 (2014): 871-896.
Chen, Ming-Hui, Joseph G. Ibrahim, Amy H Xia, Thomas Liu, and Violeta Hennessey. "Bayesian sequential meta-analysis design in evaluating cardiovascular risk in a new antidiabetic drug development program." Stat Med 33, no. 9 (2014): 1600-18.
DE Castro, Mário, Ming-Hui Chen, Joseph G. Ibrahim, and John P. Klein. "Bayesian Transformation Models for Multivariate Survival Data." Scand Stat Theory Appl 41, no. 1 (2014): 187-199.
Song, Rui, Wenbin Lu, Shuangge Ma, and Jessie X Jeng. "Censored Rank Independence Screening for High-dimensional Survival Data." Biometrika 101, no. 4 (2014): 799-814.
Rom, D. The Closure Principle Revisited., 2014.
Goldberg, Yair, Rui Song, Donglin Zeng, and Michael R. Kosorok. "Comment on "Dynamic treatment regimes: technical challenges and applications"." Electron J Stat 8, no. 1 (2014): 1290-1300.
Knickmeyer, Rebecca C., Jiaping Wang, Hongtu Zhu, Xiujuan Geng, Sandra Woolson, Robert M. Hamer, Thomas Konneker, Weili Lin, Martin Styner, and John H. Gilmore. "Common variants in psychiatric risk genes predict brain structure at birth." Cereb Cortex 24, no. 5 (2014): 1230-46.
Li, Meng, Ana-Maria Staicu, and Howard D. Bondell. cSFM: Covariate-adjusted skewed functional model (R).. 1.1 ed., 2014.
Zhao, Ying-Qi, and Michael R. Kosorok. "Discussion of combining biomarkers to optimize patient treatment recommendations." Biometrics 70, no. 3 (2014): 713-6.
Laber, Eric B., Anastasios A. Tsiatis, Marie Davidian, and Shannon T. Holloway. "Discussion of "Combining biomarkers to optimize patient treatment recommendation"." Biometrics 70, no. 3 (2014): 707-10.
Oguz, Ipek, Mahshid Farzinfar, Joy Matsui, Francois Budin, Zhexing Liu, Guido Gerig, Hans J. Johnson, and Martin Styner. "DTIPrep: quality control of diffusion-weighted images." Front Neuroinform 8 (2014): 4.
Laber, Eric B., Daniel J. Lizotte, Min Qian, William E. Pelham, and Susan A. Murphy. "Dynamic treatment regimes: technical challenges and applications." Electron J Stat 8, no. 1 (2014): 1225-1272.
Zeng, Donglin, and D Y. Lin. "Efficient Estimation of Semiparametric Transformation Models for Two-Phase Cohort Studies." J Am Stat Assoc 109, no. 505 (2014): 371-383.
Chen, Yong, Sheng Luo, Haitao Chu, Xiao Su, and Lei Nie. "An Empirical Bayes Method for Multivariate Meta-analysis with an Application in Clinical Trials." Commun Stat Theory Methods 43, no. 16 (2014): 3536-3551.
Tang, Niansheng, Puying Zhao, and Hongtu Zhu. "Empirical Likelihood for Estimating Equations with Nonignorably Missing Data." Stat Sin 24, no. 2 (2014): 723-747.
Xia, Kai, Yang Yu, Mihye Ahn, Hongtu Zhu, Fei Zou, John H. Gilmore, and Rebecca C. Knickmeyer. "Environmental and genetic contributors to salivary testosterone levels in infants." Front Endocrinol (Lausanne) 5 (2014): 187.
Ding, Jieli, Haibo Zhou, Yanyan Liu, Jianwen Cai, and Matthew P. Longnecker. "Estimating effect of environmental contaminants on women's subfecundity for the MoBa study data with an outcome-dependent sampling scheme." Biostatistics 15, no. 4 (2014): 636-50.
Zhao, Ying-Qi, and Eric B. Laber. "Estimation of optimal dynamic treatment regimes." Clin Trials 11, no. 4 (2014): 400-407.
Zhao, Yingqi. Estimation of Optimal Dynamic Treatment Regimes., 2014.
Wang, L. Evaluation of Viable Dynamic Treatment Regimes in a Sequentially Randomized Trial of Advanced Prostate Cancer., 2014.
Madar, V. Faster algorithm to control the Benjamini-Hochberg false discovery rate and its application for analysis of huge genomic data.., 2014.
Chen, Liddy M., Joseph G. Ibrahim, and Haitao Chu. "Flexible stopping boundaries when changing primary endpoints after unblinded interim analyses." J Biopharm Stat 24, no. 4 (2014): 817-33.
Yuan, Ying, John H. Gilmore, Xiujuan Geng, Styner Martin, Kehui Chen, Jane-ling Wang, and Hongtu Zhu. "FMEM: functional mixed effects modeling for the analysis of longitudinal white matter Tract data." Neuroimage 84 (2014): 753-64.
Lin, Ja-an, Hongtu Zhu, Ahn Mihye, Wei Sun, and Joseph G. Ibrahim. "Functional-mixed effects models for candidate genetic mapping in imaging genetic studies." Genet Epidemiol 38, no. 8 (2014): 680-91.
Tzeng, Jung-Ying, Wenbin Lu, and Fang-Chi Hsu. "GENE-LEVEL PHARMACOGENETIC ANALYSIS ON SURVIVAL OUTCOMES USING GENE-TRAIT SIMILARITY REGRESSION." Ann Appl Stat 8, no. 2 (2014): 1232-1255.
Lin, Dan-Yu, Ran Tao, William D. Kalsbeek, Donglin Zeng, Franklyn Gonzalez, Lindsay Fernández-Rhodes, Mariaelisa Graff, Gary G. Koch, Kari E. North, and Gerardo Heiss. "Genetic association analysis under complex survey sampling: the Hispanic Community Health Study/Study of Latinos." Am J Hum Genet 95, no. 6 (2014): 675-88.
Li, Zhiguo, Marcia Valenstein, Paul Pfeiffer, and Dara Ganoczy. "A global logrank test for adaptive treatment strategies based on observational studies." Stat Med 33, no. 5 (2014): 760-71.
Cao, Hongyuan, Michael R. Kosorok, and Shannon T. Holloway. highTtest: Simultaneous critical values for t-tests in very high dimensions (R).. 1.0 ed., 2014.
Gou, J, and AC Tamhane. Hochberg Multiple Test Procedure Under Negative Dependence., 2014.
An, Baiguo, Jianhua Guo, and Yufeng Liu. "Hypothesis testing for band size detection of high-dimensional banded precision matrices." Biometrika 101, no. 2 (2014): 477-483.
Huque, Md Hamidul, Howard Bondell, and Louise Ryan. "On the impact of covariate measurement error on spatial regression modelling." Environmetrics 25, no. 8 (2014): 560-570.
Knickmeyer, Rebecca C., Jiaping Wang, Hongtu Zhu, Xiujuan Geng, Sandra Woolson, Robert M. Hamer, Thomas Konneker, Martin Styner, and John H. Gilmore. "Impact of sex and gonadal steroids on neonatal brain structure." Cereb Cortex 24, no. 10 (2014): 2721-31.
Sarkar, S. Improving Holm's procedure using pairwise dependencies., 2014.
Benjamini, Y. In Hochberg’s tradition: Selective Inference for Clinical Trials., 2014.
Calandruccio, Lauren, and Haibo Zhou. "Increase in speech recognition due to linguistic mismatch between target and masker speech: monolingual and simultaneous bilingual performance." J Speech Lang Hear Res 57, no. 3 (2014): 1089-97.
Chakraborty, Bibhas, Eric B. Laber, and Ying-Qi Zhao. "Inference about the expected performance of a data-driven dynamic treatment regime." Clin Trials 11, no. 4 (2014): 408-417.
Hu, Jun, and Jung-Ying Tzeng. "Integrative gene set analysis of multi-platform data with sample heterogeneity." Bioinformatics 30, no. 11 (2014): 1501-7.
Hao, Ning, and Hao Helen Zhang. "Interaction Screening for Ultra-High Dimensional Data." J Am Stat Assoc 109, no. 507 (2014): 1285-1301.
Laber, Eric B., Kristin A. Linn, and Leonard A. Stefanski. "Interactive model building for -learning." Biometrika 101, no. 4 (2014): 831-847.
Zhang, Yichi. Interpretable treatment regimes., 2014.
Jiang, Liewen, Howard D. Bondell, and Huixia Judy Wang. "Interquantile Shrinkage and Variable Selection in Quantile Regression." Comput Stat Data Anal 69 (2014): 208-219.
Zhang, Danjie, Ming-Hui Chen, and Joseph G. Ibrahim. JMfit - For fitting joint models for longitudinal and survival data (SAS)., 2014.
Chen, Qingxia, Ryan C. May, Joseph G. Ibrahim, Haitao Chu, and Stephen R. Cole. "Joint modeling of longitudinal and survival data with missing and left-censored time-varying covariates." Stat Med 33, no. 26 (2014): 4560-76.
Ibrahim, Joseph G., and Stuart Lipsitz. Macros for missing data (SAS).., 2014.
Zhou, Yi-Hui. mcc: Moment corrected correlation an approximation to exact association testing of two vectors (R).. 1.0 ed., 2014.
Tang, Zheng-Zheng, and Dan-Yu Lin. "Meta-analysis of sequencing studies with heterogeneous genetic associations." Genet Epidemiol 38, no. 5 (2014): 389-401.
Murphy, Susan A.. Micro-Randomized Trials & mHealth., 2014.
Tsiatis, Anastasios A., and Marie Davidian. Missing data methods: A semiparametric perspective. In Handbook of Missing Data Methodology. Boca Raton: Chapman and Hall/CRC, 2014.
Luo, Sheng, Yong Chen, Xiao Su, and Haitao Chu. "mmeta: An R Package for Multivariate Meta-Analysis." J Stat Softw 56, no. 11 (2014): 11.
Luo, Sheng, Yong Chen, Xiao Su, and Haitao Chu. mmeta: Multivariate meta-analysis (R).. 2.2 ed., 2014.
Geng, Yuan, Wenbin Lu, and Hao Helen Zhang. "A Model-Free Machine Learning Method for Risk Classification and Survival Probability Prediction." Stat 3, no. 1 (2014): 337-350.
Chen, Yasheng, Hongtu Zhu, Hongyu An, Diane Armao, Dinggang Shen, John H. Gilmore, and Weili Lin. "More insights into early brain development through statistical analyses of eigen-structural elements of diffusion tensor imaging using multivariate adaptive regression splines." Brain Struct Funct 219, no. 2 (2014): 551-69.
Zhang, Chong, and Yufeng Liu. "Multicategory angle-based large-margin classification." Biometrika 101, no. 3 (2014): 625-640.
Zhao, Yue, Amy H. Herring, Haibo Zhou, Mirza W. Ali, and Gary G. Koch. "A multiple imputation method for sensitivity analyses of time-to-event data with possibly informative censoring." J Biopharm Stat 24, no. 2 (2014): 229-53.
Shortreed, Susan M., Eric Laber, Scott T Stroup, Joelle Pineau, and Susan A. Murphy. "A multiple imputation strategy for sequential multiple assignment randomized trials." Stat Med 33, no. 24 (2014): 4202-14.
Bompard, Lucile, Shun Xu, Martin Styner, Beatriz Paniagua, Mihye Ahn, Ying Yuan, Valerie Jewells, Wei Gao, Dinggang Shen, Hongtu Zhu et al. "Multivariate longitudinal shape analysis of human lateral ventricles during the first twenty-four months of life." PLoS One 9, no. 9 (2014): e108306.
Zeng, Donglin, Joseph G. Ibrahim, Ming-Hui Chen, Kuolung Hu, and Catherine Jia. "Multivariate recurrent events in the presence of multivariate informative censoring with applications to bleeding and transfusion events in myelodysplastic syndrome." J Biopharm Stat 24, no. 2 (2014): 429-42.
Zhang, Jing, Bradley P. Carlin, James D. Neaton, Guoxing G. Soon, Lei Nie, Robert Kane, Beth A. Virnig, and Haitao Chu. "Network meta-analysis of randomized clinical trials: reporting the proper summaries." Clin Trials 11, no. 2 (2014): 246-62.
Rosenblum, M. Optimal, Two Stage, Adaptive Enrichment Designs for Randomized Trials, using Sparse Linear Programming., 2014.
Heyse, Joseph F.. An Overview of Multiple Testing Procedures for Categorical Data., 2014.
Ha, Min Jin, and Wei Sun. "Partial correlation matrix estimation using ridge penalty followed by thresholding and re-estimation." Biometrics 70, no. 3 (2014): 765-73.
Wang, Xin, Daowen Zhang, and Jung-Ying Tzeng. "Pathway-guided identification of gene-gene interactions." Ann Hum Genet 78, no. 6 (2014): 478-91.
Lin, Lifeng, Jing Zhang, and Haitao Chu. pcnetmeta: Methods for patient-centered network meta-analysis (R).. 1.2 ed., 2014.
Kwak, Minjung, and Sin-Ho Jung. "Phase II clinical trials with time-to-event endpoints: optimal two-stage designs with one-sample log-rank test." Stat Med 33, no. 12 (2014): 2004-16.
Gao, Fei, Donglin Zeng, and Joseph G. Ibrahim. Power calculations and confidence intervals in phase II design with over enrollment (SAS/R).., 2014.
Shin, Seung Jun, Yichao Wu, Hao Helen Zhang, and Yufeng Liu. "Probability-enhanced sufficient dimension reduction for binary classification." Biometrics 70, no. 3 (2014): 546-55.
Schulte, Phillip J., Anastasios A. Tsiatis, Eric B. Laber, and Marie Davidian. "Q- and A-learning Methods for Estimating Optimal Dynamic Treatment Regimes." Stat Sci 29, no. 4 (2014): 640-661.
Molenberghs, Geert, Michael G. Kenward, Marc Aerts, Geert Verbeke, Anastasios A. Tsiatis, Marie Davidian, and Dimitris Rizopoulos. "On random sample size, ignorability, ancillarity, completeness, separability, and degeneracy: sequential trials, random sample sizes, and missing data." Stat Methods Med Res 23, no. 1 (2014): 11-41.
Jung, Sin-Ho, and Daniel J. Sargent. "Randomized phase II clinical trials." J Biopharm Stat 24, no. 4 (2014): 802-16.
Ren, Zheng, Marie Davidian, Stephen L. George, Richard M. Goldberg, Fred A. Wright, Anastasios A. Tsiatis, and Michael R. Kosorok. "Research methods for clinical trials in personalized medicine: A systematic review." In Lost In Translation: Barriers to Incentives for Translational Research in Medical Sciences. Singapore: World Scientific, 2014.
Yi, Chanhee, Alexander Sibley, and Kouros Owzar. RSNPset: Genome-wide SNP set analysis on the basis of efficient scores (R).. v0.2 ed., 2014.
Chen, Liddy M., Joseph G. Ibrahim, and Haitao Chu. "Sample size determination in shared frailty models for multivariate time-to-event data." J Biopharm Stat 24, no. 4 (2014): 908-23.
Hu, Wenrong, Jianwen Cai, and Donglin Zeng. "Sample size/power calculation for stratified case-cohort design." Stat Med 33, no. 23 (2014): 3973-85.
Zhou, Haibo, Wangli Xu, Donglin Zeng, and Jianwen Cai. "Semiparametric Inference for Data with a Continuous Outcome from a Two-Phase Probability Dependent Sampling Scheme." J R Stat Soc Series B Stat Methodol 76, no. 1 (2014): 197-215.
Laber, Eric B., Daniel J. Lizotte, and Bradley Ferguson. "Set-valued dynamic treatment regimes for competing outcomes." Biometrics 70, no. 1 (2014): 53-61.
Hyun, Jung Won, Yimei Li, John H. Gilmore, Zhaohua Lu, Martin Styner, and Hongtu Zhu. "SGPP: spatial Gaussian predictive process models for neuroimaging data." Neuroimage 89 (2014): 70-80.
Laber, Eric B.. Sizing a trial for estimation of an optimal treatment regime., 2014.
Thall, PF. SMART Design, Conduct, and Analysis in Oncology., 2014.
Vock, David M., Marie Davidian, and Anastasios A. Tsiatis. "SNP_NLMM: A SAS Macro to Implement a Flexible Random Effects Density for Generalized Linear and Nonlinear Mixed Models." J Stat Softw 56 (2014): 2.
Vock, David M., Marie Davidian, and Anastasios A. Tsiatis. SNP_NLMM: Implement a flexible random effects density for generalized linear and nonlinear mixed models (SAS).., 2014.
Jung, Sin-Ho, and Insuk Sohn. "Statistical Issues in the Design and Analysis of nCounter Projects." Cancer Inform 13, no. Suppl 7 (2014): 35-43.
Jung, Sin-Ho. "Stratified Fisher's exact test and its sample size calculation." Biom J 56, no. 1 (2014): 129-40.
Lin, Dan-Yu, R Tao, W Kalsbeek, Donglin Zeng, Franklyn Gonzalez, Lindsay Fernández-Rhodes, Mariaelisa Graff, Gary G. Koch, Kari E. North, and Gerardo Heiss. SUGEN: Genetic Association Analysis Under Complex Survey Sampling (C++)., 2014.
Chen, Tianle, Yuanjia Wang, Huaihou Chen, Karen Marder, and Donglin Zeng. "Targeted Local Support Vector Machine for Age-Dependent Classification." J Am Stat Assoc 109, no. 507 (2014): 1174-1187.
Ma, Xiaoye, Muhammad Fareed K. Suri, and Haitao Chu. "A trivariate meta-analysis of diagnostic studies accounting for prevalence and non-evaluable subjects: re-evaluation of the meta-analysis of coronary CT angiography studies." BMC Med Res Methodol 14 (2014): 128.
Almirall, D. Tutorial: Getting SMART about Dynamic Treatment Regimes: A Conceptual Introduction., 2014.
Bretz, F. Tutorial: Introduction to Multiplicity in Clinical Trials., 2014.
Shin, Seung Jun, Yichao Wu, and Hao Helen Zhang. "Two-Dimensional Solution Surface for Weighted Support Vector Machines." J Comput Graph Stat 23, no. 2 (2014): 383-402.
Jung, Sin-Ho, Yong Chen, and Hongshik Ahn. "Type I error control for tree classification." Cancer Inform 13, no. Suppl 7 (2014): 11-8.

Pages