Project 1.3: Publications


Aims       Publications       Software       Investigators

Abanto-Valle CA, Langrock R, Chen MH, Cardoso MV. "Maximum likelihood estimation for stochastic volatility in mean models with heavy-tailed distributions." Appl Stoch Models Bus Ind.;33(4):394-408. PubMed
Baldoni PL, Rashid NU, Ibrahim JG. "Improved detection of epigenomic marks with mixed effects hidden Markov models." Biometrics.;75(4):1401-1413. PubMed
Cao H, LaVange LM, Heyse JF, Mast C, Kosorok MR. "Medical records-based postmarketing safety evaluation of rare events with uncertain status." J Biopharm Stat.;23(1):201-12. PubMed
Carpenter WR, Meyer AM, Abernethy AP, Stürmer T, Kosorok MR. "A framework for understanding cancer comparative effectiveness research data needs." J Clin Epidemiol.;65(11):1150-8. PubMed
Chen Y, Liu Y, Ning J, Nie L, Zhu H, Chu H. "A composite likelihood method for bivariate meta-analysis in diagnostic systematic reviews." Stat Methods Med Res.;26(2):914-930. PubMed
Chen Y, Liu Y, Ning J, Cormier J, Chu H. "A hybrid model for combining case-control and cohort studies in systematic reviews of diagnostic tests." J R Stat Soc Ser C Appl Stat.;64(3):469-489. PubMed
Chen Y, Luo S, Chu H, Su X, Nie L. "An empirical bayes method for multivariate meta-analysis with an application in clinical trials." Commun Stat Theory Methods.;43(16):3536-3551. PubMed
Chen Y, Chu H, Luo S, Nie L, Chen S. "Bayesian analysis on meta-analysis of case-control studies accounting for within-study correlation." Stat Methods Med Res.;24(6):836-55. PubMed
Chen MH, Ibrahim JG, Lam P, Yu A, Zhang Y. "Bayesian design of noninferiority trials for medical devices using historical data." Biometrics.;67(3):1163-70. PubMed
Chen MH, Ibrahim JG, Zeng D, Hu K, Jia C. "Bayesian design of superiority clinical trials for recurrent events data with applications to bleeding and transfusion events in myelodyplastic syndrome." Biometrics.;70(4):1003-13. PubMed
Chen Y, Luo S, Chu H, Wei P. "Bayesian inference on risk differences: an application to multivariate meta-analysis of adverse events in clinical trials." Stat Biopharm Res.;5(2):142-155. PubMed
Chen Q, Chen MH, Ohlssen D, Ibrahim JG. "Bayesian modeling and inference for clinical trials with partial retrieved data following dropout." Stat Med.;32(24):4180-95. PubMed
Chen MH, Ibrahim JG, Xia A, Liu T, Hennessey V. "Bayesian sequential meta-analysis design in evaluating cardiovascular risk in a new antidiabetic drug development program." Stat Med.;33(9):1600-18. PubMed
Chen L, Lin DY, Zeng D. "Checking semiparametric transformation models with censored data." Biostatistics.;13(1):18-31. PubMed
Chen Y, An H, Zhu H, Jewells V, Armao D, Shen D, Gilmore JH, Lin W. "Longitudinal regression analysis of spatial-temporal growth patterns of geometrical diffusion measures in early postnatal brain development with diffusion tensor imaging." Neuroimage.;58(4):993-1005. PubMed
Chen MH, Ibrahim JG, Shah AK, Lin J, Yao H. "Meta-analysis methods and models with applications in evaluation of cholesterol-lowering drugs." Stat Med.;31(28):3597-616. PubMed
Chen Y, Zhu H, An H, Armao D, Shen D, Gilmore JH, Lin W. "More insights into early brain development through statistical analyses of eigen-structural elements of diffusion tensor imaging using multivariate adaptive regression splines." Brain Struct Funct.;219(2):551-69. PubMed
Chen Q, Zeng D, Ibrahim JG, Chen MH, Pan Z, Xue X. "Quantifying the average of the time-varying hazard ratio via a class of transformations." Lifetime Data Anal.;21(2):259-79. PubMed
Chen Y, Ji S, Wu X, An H, Zhu H, Shen D, Lin W. "Simulation of brain mass effect with an arbitrary Lagrangian and Eulerian FEM." Med Image Comput Comput Assist Interv.;13(Pt 2):274-81. PubMed
Chow SM, Tang N, Yuan Y, Song X, Zhu H. "Bayesian estimation of semiparametric nonlinear dynamic factor analysis models using the Dirichlet process prior." Br J Math Stat Psychol.;64(Pt 1):69-106. PubMed
Chow SM, Lu Z, Sherwood A, Zhu H. "Fitting nonlinear ordinary differential equation models with random effects and unknown initial conditions using the stochastic approximation expectation-maximization (SAEM) algorithm." Psychometrika.;81(1):102-34. PubMed
Chu H, Guo H, Zhou Y. "Bivariate random effects meta-analysis of diagnostic studies using generalized linear mixed models." Med Decis Making.;30(4):499-508. PubMed
Chu H, Nie L, Chen Y, Huang Y, Sun W. "Bivariate random effects models for meta-analysis of comparative studies with binary outcomes: methods for the absolute risk difference and relative risk." Stat Methods Med Res.;21(6):621-33. PubMed
Chu H, Lofgren ET, Halloran E, Kuan PF, Hudgens M, Cole SR. "Performance of rapid influenza H1N1 diagnostic tests: a meta-analysis." Influenza Other Respir Viruses.;6(2):80-6. PubMed
Cornea E, Zhu H, Kim P, Ibrahim JG. "Regression models on Riemannian symmetric spaces." J R Stat Soc Series B Stat Methodol.;79(2):463-482. PubMed
Diao G, Liu GF, Zeng D, Wang W, Tan X, Heyse JF, Ibrahim JG. "Efficient methods for signal detection from correlated adverse events in clinical trials." Biometrics.;75(3):1000-1008. PubMed
Diao G, Zeng D, Ibrahim JG, Rong A, Lee O, Zhang K, Chen Q. "Statistical design of noninferiority multiple region clinical trials to assess global and consistent treatment effects." J Biopharm Stat.;27(6):933-944. PubMed
Eggleston BS, Ibrahim JG, Catellier D. "Bayesian clinical trial design using Markov models with applications to autoimmune disease." Contemp Clin Trials.;63:73-83. PubMed
Gao Q, Ahn M, Zhu H. "Cook's distance measures for varying coefficient models with functional responses." Technometrics.;57(2):268-280. PubMed
Gao W, Zhu H, Giovanello K, Lin W. "Multivariate network-level approach to detect interactions between large-scale functional systems." Med Image Comput Comput Assist Interv.;13(Pt 2):298-305. PubMed
Guo R, Ahn M, Zhu H. "Spatially weighted principal component analysis for imaging classification." J Comput Graph Stat.;24(1):274-296. PubMed
Ha MJin, Sun W. "Partial correlation matrix estimation using ridge penalty followed by thresholding and re-estimation." Biometrics.;70(3):765-73. PubMed
Hua Z, Zhu H, Dunson DB. "Semiparametric Bayes local additive models for longitudinal data." Stat Biosci.;7(1):90-107. PubMed
Hua Z, Dunson DB, Gilmore JH, Styner MA, Zhu H. "Semiparametric Bayesian local functional models for diffusion tensor tract statistics." Neuroimage.;63(1):460-74. PubMed
Huang C, Shan L, Charles C, Wirth W, Niethammer M, Zhu H. "Diseased region detection of longitudinal knee magnetic resonance imaging data." IEEE Trans Med Imaging.;34(9):1914-27. PubMed
Huang C, Shan L, Charles C, Niethammer M, Zhu H. "Diseased region detection of longitudinal knee MRI data." Inf Process Med Imaging.;23:632-43. PubMed
Hyun JWon, Li Y, Gilmore JH, Lu Z, Styner M, Zhu H. "SGPP: Spatial Gaussian predictive process models for neuroimaging data." Neuroimage.;89:70-80. PubMed
Ibrahim JG, Chen MH, Xia A, Liu T. "Bayesian meta-experimental design: evaluating cardiovascular risk in new antidiabetic therapies to treat type 2 diabetes." Biometrics.;68(2):578-86. PubMed
Ibrahim JG, Chen MH, Chu H. "Bayesian methods in clinical trials: A Bayesian analysis of ECOG trials E1684 and E1690." BMC Med Res Methodol.;12:183. PubMed
Ibrahim JG, Zhu H, Garcia RI, Guo R. "Fixed and random effects selection in mixed effects models." Biometrics.;67(2):495-503. PubMed
Ibrahim JG, Chu H, Chen MH. "Missing data in clinical studies: Issues and methods." J Clin Oncol.;30(26):3297-303. PubMed
Kim S, Chen MH, Ibrahim JG, Shah AK, Lin J. "Bayesian inference for multivariate meta-analysis Box-Cox transformation models for individual patient data with applications to evaluation of cholesterol-lowering drugs." Stat Med.;32(23):3972-90. PubMed
Knickmeyer RC, Wang J, Zhu H, Geng X, Woolson S, Hamer RM, Konneker T, Lin W, Styner M, Gilmore JH. "Common variants in psychiatric risk genes predict brain structure at birth." Cereb Cortex.;24(5):1230-46. PubMed
Leão WL, Abanto-Valle CA, Chen MH. "Bayesian analysis of stochastic volatility-in-mean model with leverage and asymmetrically heavy-tailed error using generalized hyperbolic skew Student's t-distribution." Stat Interface.;10:529-541. PubMed
Lewis PO, Chen MH, Kuo L, Lewis LA, Fučíková K, Neupane S, Wang YB, Shi D. "Estimating Bayesian phylogenetic information content. " Syst Biol.;65(6):1009-1023. PubMed
Li J, Zhou AXiaohua, Fine JP. "A regression approach to ROC surface, with applications to Alzheimer's disease." Sci China Math.;55(8):1583-1595. PubMed
Li J, Fine JP. "Assessing the dependence of sensitivity and specificity on prevalence in meta-analysis." Biostatistics.;12(4):710-22. PubMed
Li J, Jiang B, Fine JP. "Multicategory reclassification statistics for assessing improvements in diagnostic accuracy." Biostatistics.;14(2):382-94. PubMed
Li Y, Gilmore JH, Shen D, Styner M, Lin W, Zhu H. "Multiscale adaptive generalized estimating equations for longitudinal neuroimaging data." Neuroimage.;72:91-105. PubMed
Li Y, Zhu H, Shen D, Lin W, Gilmore JH, Ibrahim JG. "Multiscale adaptive regression models for neuroimaging data." J R Stat Soc Series B Stat Methodol.;73(4):559-578. PubMed
Li Y, Gilmore JH, Wang J, Styner M, Lin W, Zhu H. "TwinMARM: Two-stage multiscale adaptive regression methods for twin neuroimaging data." IEEE Trans Med Imaging.;31(5):1100-12. PubMed
Li J, Fine JP. "Weighted area under the receiver operating characteristic curve and its application to gene selection..
Li J, Fine JP. "Weighted area under the receiver operating characteristic curve and Its application to gene selection." J R Stat Soc Ser C Appl Stat.;59(4):673-692. PubMed
Lin Jan, Zhu H, Mihye A, Sun W, Ibrahim JG. "Functional-mixed effects models for candidate genetic mapping in imaging genetic studies." Genet Epidemiol.;38(8):680-91. PubMed
Liu Y, Chen Y, Chu H. "A unification of models for meta-analysis of diagnostic accuracy studies without a gold standard." Biometrics.;71(2):538-47. PubMed
Lu ZH, Khondker Z, Ibrahim JG, Wang Y, Zhu H. "Bayesian longitudinal low-rank regression models for imaging genetic data from longitudinal studies." Neuroimage.;149:305-322. PubMed
Luo S, Chen Y, Su X, Chu H. "mmeta: An R package for multivariate meta-analysis." J Stat Softw.;56(11):11. PubMed
Ma X, Chen Y, Cole SR, Chu H. "A hybrid Bayesian hierarchical model combining cohort and case-control studies for meta-analysis of diagnostic tests: Accounting for partial verification bias." Stat Methods Med Res.;25(6):3015-3037. PubMed
Ma X, Suri MFareed K, Chu H. "A trivariate meta-analysis of diagnostic studies accounting for prevalence and non-evaluable subjects: re-evaluation of the meta-analysis of coronary CT angiography studies." BMC Med Res Methodol.;14:128. PubMed
Ma GJulie, Chi E, Ibrahim JG, Parker RA. "Assessing Similarity to Existing Drugs to Decide Whether to Continue Drug Development." Stat Biopharm Res.;4(3):293-300. PubMed
Ma X, Nie L, Cole SR, Chu H. "Statistical methods for multivariate meta-analysis of diagnostic tests: An overview and tutorial." Stat Methods Med Res.;25(4):1596-619. PubMed
McClure RK, Styner M, Maltbie E, Lieberman JA, Gouttard S, Gerig G, Shi X, Zhu H. "Localized differences in caudate and hippocampal shape are associated with schizophrenia but not antipsychotic type." Psychiatry Res.;211(1):1-10. PubMed
Meyer AM, Carpenter WR, Abernethy AP, Stürmer T, Kosorok MR. "Data for cancer comparative effectiveness research: past, present, and future potential." Cancer.;118(21):5186-97. PubMed
Miranda MF, Zhu H, Ibrahim JG. "Bayesian spatial transformation models with applications in neuroimaging data." Biometrics.;69(4):1074-83. PubMed
Oguz I, Farzinfar M, Matsui J, Budin F, Liu Z, Gerig G, Johnson HJ, Styner M. "DTIPrep: quality control of diffusion-weighted images." Front Neuroinform.;8:4. PubMed
Sanoff HK, Carpenter WR, Martin CF, Sargent DJ, Meyerhardt JA, Stürmer T, Fine JP, Weeks J, Niland J, Kahn KL, Schymura MJ, Schrag D. "Comparative effectiveness of oxaliplatin vs non-oxaliplatin-containing adjuvant chemotherapy for stage III colon cancer." J Natl Cancer Inst.;104(3):211-27. PubMed
Schifano ED, Wu J, Wang C, Yan J, Chen MH. "Online updating of statistical inference in the big data setting." Technometrics.;58(3):393-403. PubMed
Shi Y, Short SJ, Knickmeyer RC, Wang J, Coe CL, Niethammer M, Gilmore JH, Zhu H, Styner MA. "Diffusion tensor imaging-based characterization of brain neurodevelopment in primates." Cereb Cortex.;23(1):36-48. PubMed
Shi X, Zhu H, Ibrahim JG, Liang F, Lieberman J, Styner M. "Intrinsic regression models for medial representation of subcortical structures." J Am Stat Assoc.;107(497):12-23. PubMed
Skup M, Zhu H, Zhang H. "Multiscale adaptive marginal analysis of longitudinal neuroimaging data with time-varying covariates." Biometrics.;68(4):1083-92. PubMed
Skup M, Zhu H, Wang Y, Giovanello KS, Lin Jan, Shen D, Shi F, Gao W, Lin W, Fan Y, Zhang H. "Sex differences in grey matter atrophy patterns among AD and aMCI patients: results from ADNI." Neuroimage.;56(3):890-906. PubMed
Sun Q, Zhu H, Liu Y, Ibrahim JG. "SPReM: Sparse projection regression model for high-dimensional linear regression." J Am Stat Assoc.;110(509):289-302. PubMed
Tang N, Zhao P, Zhu H. "Empirical likelihood for estimating equations with nonignorably missing data." Stat Sin.;24(2):723-747. PubMed
Todem D, Fine J, Peng L. "A global sensitivity test for evaluating statistical hypotheses with nonidentifiable models." Biometrics.;66(2):558-66. PubMed
Verde AR, Budin F, Berger JB, Gupta A, Farzinfar M, Kaiser A, Ahn M, Johnson H, Matsui J, Hazlett HC, Sharma A, Goodlett C, Shi Y, Gouttard S, Vachet C, Piven J, Zhu H, Gerig G, Styner M. "UNC-Utah NA-MIC framework for DTI fiber tract analysis." Front Neuroinform.;7:51. PubMed
Viele K, Berry S, Neuenschwander B, Amzal B, Chen F, Enas N, Hobbs B, Ibrahim JG, Kinnersley N, Lindborg S, Micallef S, Roychoudhury S, Thompson L. "Use of historical control data for assessing treatment effects in clinical trials." Pharm Stat.;13(1):41-54. PubMed
Wang J, Shen H, Zhu H. "Discussion of the paper "Clustering random curves under spatial interdependence with application to service accessibility" by Jiang and Serban." Technometrics.;54(2):129-133. PubMed
Wang SY, Chu H, Shamliyan T, Jalal H, Kuntz KM, Kane RL, Virnig BA. "Network meta-analysis of margin threshold for women with ductal carcinoma in situ." J Natl Cancer Inst.;104(7):507-16. PubMed
Wang C, Chen MH, Wu J, Yan J, Zhang Y, Schifano E. "Online updating method with new variables for big data streams." Can J Stat.;46(1):123-146. PubMed
Wang W, Chen MH, Chiou SHan, Lai HC, Wang X, Yan J, Zhang Z. "Onset of persistent pseudomonas aeruginosa infection in children with cystic fibrosis with interval censored data." BMC Med Res Methodol.;16(1):122. PubMed
Wang YB, Chen MH, Kuo L, Lewis PO. "Partition weighted approach for estimating the marginal posterior density with applications." J Comput Graph Stat.;28(2):334-349. PubMed
Wang C, Chen MH, Schifano E, Wu J, Yan J. "Statistical methods and computing for big data." Stat Interface.;9(4):399-414. PubMed
Xia K, Yu Y, Ahn M, Zhu H, Zou F, Gilmore JH, Knickmeyer RC. "Environmental and genetic contributors to salivary testosterone levels in infants." Front Endocrinol (Lausanne).;5:187. PubMed
Yuan Y, Gilmore JH, Geng X, Styner MA, Chen K, Wang Jling, Zhu H. "A longitudinal functional analysis framework for analysis of white matter tract statistics." Inf Process Med Imaging.;23:220-31. PubMed
Yuan Y, Gilmore JH, Geng X, Martin S, Chen K, Wang Jling, Zhu H. "FMEM: Functional mixed effects modeling for the analysis of longitudinal white matter Tract data." Neuroimage.;84:753-64. PubMed
Yuan Y, Zhu H, Lin W, Marron JS. "Local polynomial regression for symmetric positive definite matrices." J R Stat Soc Series B Stat Methodol.;74(4):697-719. PubMed
Zeng D, Chen MH, Ibrahim JG, Wei R, Ding B, Ke C, Jiang Q. "A counterfactual p-value approach for benefit-risk assessment in clinical trials." J Biopharm Stat.;25(3):508-24. PubMed
Zeng D, Chen Q, Chen MH, Ibrahim JG. "Estimating treatment effects with treatment switching via semicompeting risks models: an application to a colorectal cancer study." Biometrika.;99(1):167-184. PubMed
Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W. "Bayesian model assessment in joint modeling of longitudinal and survival data with applications to cancer clinical trials." J Comput Graph Stat.;26(1):121-133. PubMed
Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W. "JMFit: A SAS macro for joint models of longitudinal and survival data." J Stat Softw.;71(3). PubMed
Zhang J, Carlin BP, Neaton JD, Soon GG, Nie L, Kane R, Virnig BA, Chu H. "Network meta-analysis of randomized clinical trials: reporting the proper summaries." Clin Trials.;11(2):246-62. PubMed
Zhou H, Li L, Zhu H. "Tensor regression with applications in neuroimaging data analysis." J Am Stat Assoc.;108(502):540-552. PubMed
Zhu H, Khondker Z, Lu Z, Ibrahim JG. "Bayesian generalized low rank regression models for neuroimaging phenotypes and genetic markers." J Am Stat Assoc.;109(507):997-990. PubMed
Zhu H, Kong L, Li R, Styner M, Gerig G, Lin W, Gilmore JH. "FADTTS: Functional analysis of diffusion tensor tract statistics." Neuroimage.;56(3):1412-25. PubMed
Zhu H, Li R, Kong L. "Multivariate varying coefficient model for functional responses." Ann Stat.;40(5):2634-2666. PubMed
Zhu H, Styner M, Li Y, Kong L, Shi Y, Lin W, Coe C, Gilmore JH. "Multivariate varying coefficient models for DTI tract statistics." Med Image Comput Comput Assist Interv.;13(Pt 1):690-7. PubMed