Publications

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Software
Lin, Dan-Yu, Donglin Zeng, and Zheng-Zheng Tang. SCORE-SeqTDS: Score tests for sequencing studies with trait-dependent sampling (C).. 3.0 ed., 2013.
Hu, Yi-Juan, Yun Li, Paul L. Auer, and Dan-Yu Lin. SEQGWAS: Integrative analysis of sequencing and GWAS data (C/C++).. 1.0 ed., 2015.
Kimes, Patrick. sigclust2: Statistical Significance for Hierarchical Clustering (R). 1.2.4 ed., 2016.
Ivanova, Anastasia, and A Deal. Simon’s like design with relaxed futility stopping (Web)., 2017.
Stefanski, Leonard A., Yichao Wu, and Kyle White. skda: Sparse (multicategory) kernel discriminant analysis (R).. 0.1 ed., 2013.
Yi, Chanhee, Alexander Sibley, and Kouros Owzar. snplist: Tools to create gene sets (R).. 0.12 ed., 2013.
Hu, Yi-Juan, Dan-Yu Lin, and Donglin Zeng. SNPMStat v4.0 : Statistical analysis of SNP-disease association with missing genotype data.., 2011.
Vock, David M., Marie Davidian, and Anastasios A. Tsiatis. SNP_NLMM: Implement a flexible random effects density for generalized linear and nonlinear mixed models (SAS).., 2014.
Mitha, Faheem, Herodotos Herodotou, Nedyalko Borisov, Chen Jiang, Josh Yoder, and Kouros Owzar. SNPpy: Database management for SNP data from genome wide association studies.., 2011.
Fan, Aiilin, and Shannon T. Holloway. subdetect: Detect subgroup with an enhanced treatment effect (R).. 1.1 ed., 2016.
Lin, Dan-Yu, R Tao, W Kalsbeek, Donglin Zeng, Franklyn Gonzalez, Lindsay Fernández-Rhodes, Mariaelisa Graff, Gary G. Koch, Kari E. North, and Gerardo Heiss. SUGEN: Genetic Association Analysis Under Complex Survey Sampling (C++)., 2014.
Cao, Hongyuan, Mathew M. Churpek, Donglin Zeng, Jason P. Fine, and Shannon T. Holloway. SurvLong: Analysis of proportional hazards model with sparse longitudinal covariates (R).. 1.0 ed., 2015.
Jung, Sin-Ho, and Stanley S Young. survSNP: Power and sample size calculations for SNP association studies with censored time-to-event outcomes (R).., 2012.
Chen, Mengjie. SynthEx: Tools for CNA detection and tumor heterogeneity profiling (R)., 2017.
Web Article
George, Stephen L.. Sorting the wheat from the chaff: How do we know which cancer therapies really work? . Huffington Post, 2013.

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