Publications
Sorting the wheat from the chaff: How do we know which cancer therapies really work? . Huffington Post, 2013.
Q-Learning. In Wiley StatsRef: Statistics Reference Online. Wiley, 2018.
Optimal dynamic treatment regimes In Wiley Statsref. Optimal dynamic treatment regimes., 2016.
Nonconvex Optimization. In Wiley StatsRef: Statistics Reference Online., 2018.
Enriched biomarker-driven clinical trials. In Wiley StatsRef: Statistics Reference Online. Wiley, 2019.
tagIMPUTE: Tag-based imputation.. 1.0 ed., 2010.
SurvLong: Analysis of proportional hazards model with sparse longitudinal covariates (R).. 1.0 ed., 2015.
snplist: Tools to create gene sets (R).. 0.12 ed., 2013.
skda: Sparse (multicategory) kernel discriminant analysis (R).. 0.1 ed., 2013.
sigclust2: Statistical Significance for Hierarchical Clustering (R). 1.2.4 ed., 2016.
SCORE-Seq: Score tests for detecting disease associations with rare variants in sequencing studies (C).. 5.0 ed., 2013.
Sample size calculation for comparing survival curves under general hypotheses testing (Fortran).., 2012.
RLT: Reinforcement learning trees (R).. 2.0 ed., 2015.
PreMeta: Facilitates the Exchange of Information Between Software Packages for Meta-Analysis (C++)., 2017.
Power calculations and confidence intervals in phase II design with over enrollment (SAS/R).., 2014.
POINT: Protein Structure Guided Local Test (R). 1.0 ed., 2019.
OTRselect: Variable selection for optimal treatment decision (R).. 1.0 ed. CRAN Repository, 2016.
odsroc: Nonparametric estimation of AUC and partial AUC under test-result-dependent sampling (R).., 2012.
normDesign: Bayesian sample size for non-inferiority randomized trials with normal data (SAS).., 2016.
MOST: Multivariate outcome score test (C).. 1.0 ed., 2013.
modelObj: A model object framework for regression analysis (R).. 1.0 ed., 2015.
mmeta: Multivariate meta-analysis (R).. 2.2 ed., 2014.
mcc: Moment corrected correlation an approximation to exact association testing of two vectors (R).. 1.0 ed., 2014.
MASS: Meta-analysis of sequencing studies (C).. 5.0 ed., 2013.
Macros for missing data (SAS).., 2014.
logi: Logistic regression using forward selection (R).. 2.0 ed., 2013.
jtGWAS: Efficient Jonckheere-Terpstra test statistics (R).. 1.0 ed., 2016.
JMDesign: Statistical design for joint models of longitudinal and survival data (R).. v1.1 ed., 2012.
JAGUAR: Joint analysis of genotype and group-specific variability using a novel score test approach to map expression quantitative trait loci (eQTL) (R). 3.0.1 ed., 2016.
intcensROC: Fast Spline Function Based Constrained Maximum Likelihood Estimator for AUC Estimation of Interval Censored Survival Data (R). 0.1.1 ed., 2018.
Haplo.CasGLM: Haplotype specific simultaneous factor selection and collapsing levels in GLM (R).. 3rd ed., 2013.
groupedSurv: Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function (R). 1.0.0 ed., 2018.
GGMridge: Gaussian graphical models using ridge penalty followed by thresholding and reestimation (R).. 1.0 ed., 2016.
Galax (C++)., 2016.
fastJT: Efficient Jonckheere-Terpstra Test Statistics for Robust Machine Learning and Genome-Wide Association Studies (R). 1.0.4 ed., 2017.
DynTxRegime: A comprehensive package for analysis of dynamic treatment regimes (R).. v3.1 ed., 2017.
dtrSurv: Dynamic Treatment Regimes for Survival Analysis (R). 1.1 ed., 2020.
DTRlearn: Learning Algorithms for Dynamic Treatment Regimes (R). 1.3 ed., 2018.
DOVE: Durability of Vaccine Efficacy. v1.2 ed., 2021.
doublyRobust: Doubly robust estimation for monotonely coarsened data in longitudinal studies with dropout and/or incomplete data (R).. 2nd ed., 2013.
CTD Systems (Java)., 2017.
cSFM: Covariate-adjusted skewed functional model (R).. 1.1 ed., 2014.
CRM2DIM: Dual-Agent Bayesian Continual Reassessment Method (SAS). 1.0 ed., 2019.
CONCUR: Kernel-based association test for copy number variation (CNV) aggregate analysis (R)., 2020.